STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4572PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sus:Acid_2865 short-chain dehydrogenase/reductase SDR. (230 aa)    
Predicted Functional Partners:
Dfer_1898
PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: fnu:FN1687 gluconate 5-dehydrogenase.
  
     0.742
Dfer_1893
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pca:Pcar_1139 short-chain alcohol dehydrogenase-like protein.
  
     0.728
Dfer_4671
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hypothetical protein.
  
     0.711
Dfer_1972
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: smd:Smed_3585 short-chain dehydrogenase/reductase SDR.
  
     0.707
Dfer_4571
TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: chu:CHU_1600 6-phosphofructokinase II; Belongs to the carbohydrate kinase PfkB family.
  
    0.702
Dfer_5255
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aba:Acid345_3509 short-chain dehydrogenase/reductase SDR.
  
     0.698
Dfer_2333
PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: ppf:Pput_3860 3-ketoacyl-(acyl-carrier- protein) reductase.
  
     0.682
Dfer_1291
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: oan:Oant_2226 short-chain dehydrogenase/reductase SDR.
  
     0.679
Dfer_0269
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: chy:CHY_1186 short chain dehydrogenase/reductase family oxidoreductase.
  
     0.671
Dfer_5738
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: fjo:Fjoh_4121 short-chain dehydrogenase/reductase SDR.
  
     0.652
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.