STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4591SMART: Parallel beta-helix repeat; KEGG: bpy:Bphyt_6288 hypothetical protein. (729 aa)    
Predicted Functional Partners:
Dfer_5506
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: det:DET1087 HK97 family portal protein, putative.
  
   0.578
Dfer_0953
KEGG: chu:CHU_3522 hypothetical protein.
  
 
   0.507
Dfer_5508
Hypothetical protein; KEGG: nmc:NMC0858 putative phage-related protein.
  
 
 0.498
Dfer_0121
KEGG: gfo:GFO_0220 hypothetical protein.
  
 
   0.490
Dfer_1803
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1154 SusD/RagB family protein.
  
 
   0.465
Dfer_4589
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: bfs:BF3259 putative UDP-glucuronic acid epimerase.
  
    0.441
Dfer_4590
PFAM: glycosyl transferase group 1; KEGG: abu:Abu_0679 glycosyltransferase.
       0.434
Dfer_0123
KEGG: chu:CHU_3522 hypothetical protein.
  
 
   0.428
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.