STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4649PFAM: YceI family protein; KEGG: chu:CHU_0382 hypothetical protein; Belongs to the UPF0312 family. (177 aa)    
Predicted Functional Partners:
Dfer_4627
PFAM: YceI family protein; KEGG: chu:CHU_0676 hypothetical protein; Belongs to the UPF0312 family.
  
     0.773
Dfer_4650
KEGG: bpu:BPUM_0430 hypothetical protein.
       0.707
Dfer_4651
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fjo:Fjoh_4307 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.562
Dfer_2422
PFAM: YceI family protein; KEGG: fjo:Fjoh_4888 hypothetical protein; Belongs to the UPF0312 family.
  
     0.541
Dfer_4648
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: lbf:LBF_3315 TonB-dependant outer membrane receptor.
       0.431
Dfer_4652
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: lbf:LBF_1390 transcriptional regulator, AraC family.
       0.431
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.