STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4698TIGRFAM: membrane-bound dehydrogenase domain protein; PFAM: blue (type 1) copper domain protein; KEGG: rba:RB524 secreted glycosyl hydrolase. (1180 aa)    
Predicted Functional Partners:
Dfer_4699
KEGG: rba:RB1854 hypothetical protein.
    
0.891
Dfer_4700
PFAM: oxidoreductase domain protein; KEGG: rba:RB8781 NADH-dependent oxidoreductase.
 
     0.847
Dfer_4536
TIGRFAM: heme-binding protein; KEGG: rba:RB5806 hypothetical protein.
   
 0.795
Dfer_4289
PFAM: oxidoreductase domain protein; KEGG: rba:RB8781 NADH-dependent oxidoreductase.
 
     0.785
Dfer_4701
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aau:AAur_1891 putative sugar phosphate isomerase/epimerase.
 
     0.684
Dfer_3173
KEGG: rba:RB7476 signal peptide.
     0.642
Dfer_4697
KEGG: bfs:BF0290 hypothetical protein.
       0.613
Dfer_1034
TIGRFAM: heme-binding protein; KEGG: rba:RB24 L-sorbosone dehydrogenase.
  
     0.590
Dfer_0291
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pdi:BDI_2741 hypothetical protein.
 
     0.586
Dfer_4538
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aau:AAur_1891 putative sugar phosphate isomerase/epimerase.
 
     0.560
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.