STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4713KEGG: cak:Caul_4605 hypothetical protein. (164 aa)    
Predicted Functional Partners:
Dfer_4714
KEGG: cak:Caul_4606 glucose-methanol-choline oxidoreductase.
 
 
 0.940
Dfer_0330
Oxidoreductase; KEGG: amc:MADE_00434 oxidoreductase.
 
 
 0.820
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
  
 0.819
Dfer_2494
PFAM: glucose-methanol-choline oxidoreductase; KEGG: pat:Patl_2686 glucose-methanol-choline oxidoreductase.
 
 
 0.806
Dfer_5724
PFAM: glucose-methanol-choline oxidoreductase; KEGG: pat:Patl_2686 glucose-methanol-choline oxidoreductase.
 
 
 0.806
Dfer_0230
PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: sru:SRU_2529 GMC oxidoreductase family protein.
 
 
 0.798
Dfer_3234
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_3914 hypothetical protein.
 
     0.725
Dfer_2130
PFAM: protein of unknown function DUF1080; KEGG: smt:Smal_1044 protein of unknown function DUF1080.
 
     0.679
Dfer_2705
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ote:Oter_3285 xylose isomerase domain- containing protein.
  
     0.620
Dfer_2982
PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: cja:CJA_3342 nucleoside-transport system protein.
 
     0.609
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.