STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4730PFAM: Colicin V production protein; KEGG: chu:CHU_3405 hypothetical protein. (177 aa)    
Predicted Functional Partners:
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
   
  
 0.920
Dfer_4043
Amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; KEGG: chu:CHU_2612 amidophosphoribosyltransferase.
  
  
 0.902
Dfer_4180
Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein domain protein; KEGG: bth:BT_4211 putative phosphoribosylformylglycinamidine cyclo-ligase.
   
  
 0.831
purC
PFAM: SAICAR synthetase; KEGG: chu:CHU_1912 phosphoribosylaminoimidazole- succinocarboxamide synthase.
  
    0.831
Dfer_4729
KEGG: chu:CHU_3404 hypothetical protein.
       0.811
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
   
    0.788
Dfer_3604
KEGG: aas:Aasi_1432 hypothetical protein.
  
     0.764
Dfer_5205
PFAM: protein of unknown function DUF1239; KEGG: chu:CHU_3270 hypothetical protein.
 
    0.757
Dfer_5769
KEGG: aas:Aasi_1341 hypothetical protein.
  
     0.756
Dfer_3762
SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_2830 TPR repeat-containing protein.
  
     0.750
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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