STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4754KEGG: chu:CHU_3507 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Dfer_4755
KEGG: fjo:Fjoh_4111 hypothetical protein.
       0.796
Dfer_4753
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ccr:CC_1225 glucose-fructose oxidoreductase.
       0.561
Dfer_4756
Hypothetical protein.
       0.462
Dfer_1124
PFAM: plasmid maintenance system killer; KEGG: ppd:Ppro_3837 plasmid maintenance system killer.
   
 
 0.458
Dfer_2504
PFAM: plasmid maintenance system killer; KEGG: pen:PSEEN1945 proteic killer suppression protein.
   
 
 0.458
Dfer_4499
PFAM: plasmid maintenance system killer; KEGG: btr:Btr_0421 hypothetical protein.
   
 
 0.458
Dfer_4917
PFAM: plasmid maintenance system killer; KEGG: chu:CHU_0643 hypothetical protein.
   
 
 0.458
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.