STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4777KEGG: chu:CHU_2217 hypothetical protein. (426 aa)    
Predicted Functional Partners:
Dfer_4465
KEGG: chu:CHU_0029 gliding motility-related protein.
  
 
   0.967
Dfer_4024
KEGG: chu:CHU_2709 PorT-related protein.
  
     0.772
Dfer_2914
KEGG: chu:CHU_0170 hypothetical protein.
  
     0.765
Dfer_4247
KEGG: chu:CHU_3238 hypothetical protein.
  
   
 0.765
Dfer_4004
KEGG: chu:CHU_2674 hypothetical protein.
  
     0.764
Dfer_5028
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_0177 TPR repeat-containing gliding mobility protein.
  
     0.762
Dfer_4003
KEGG: chu:CHU_2674 hypothetical protein.
  
     0.757
Dfer_3694
PFAM: protein of unknown function DUF323; KEGG: chu:CHU_3494 gliding motility-related protein; serine kinase.
  
     0.742
Dfer_4560
Protein involved in gliding motility GldD; KEGG: aas:Aasi_0643 hypothetical protein.
  
     0.741
Dfer_5211
KEGG: chu:CHU_3014 hypothetical protein.
  
     0.741
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.