STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4822KEGG: fjo:Fjoh_3249 alkaline phosphatase. (261 aa)    
Predicted Functional Partners:
Dfer_4972
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fjo:Fjoh_3412 hypothetical protein.
      0.593
Dfer_5704
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4168 hypothetical protein.
  
     0.569
Dfer_4171
L-glutaminase; PFAM: Domain of unknown function DUF1793; KEGG: pdi:BDI_0977 glutaminase A.
  
     0.526
Dfer_4821
TIGRFAM: ethanolamine transproter; PFAM: amino acid permease-associated region; KEGG: psp:PSPPH_1795 ethanolamine permease family protein.
       0.518
Dfer_4823
PFAM: amino acid permease-associated region; KEGG: fps:FP1732 amino acid-transporting permease.
       0.495
Dfer_2244
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_3250 RagB/SusD domain-containing protein.
  
     0.456
Dfer_5705
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_4169 TonB-dependent receptor.
  
     0.430
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.