STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4863KEGG: fjo:Fjoh_3290 hypothetical protein. (402 aa)    
Predicted Functional Partners:
Dfer_2212
PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: rca:Rcas_2945 cobalamin synthesis protein P47K.
  
  
 0.807
Dfer_1836
PFAM: tyrosinase; KEGG: dac:Daci_1610 tyrosinase.
  
     0.709
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.694
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aas:Aasi_0570 hypothetical protein; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.692
Dfer_1837
Metal-binding integral membrane protein-like protein; KEGG: sil:SPO1406 hypothetical protein.
  
     0.656
Dfer_0563
PFAM: protein of unknown function DUF839; KEGG: fps:FP0567 hypothetical protein.
 
     0.652
Dfer_3291
TIGRFAM: methyltransferase FkbM family; KEGG: min:Minf_1066 SAM-dependent methyltransferase.
 
     0.585
Dfer_2640
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_1695 sugar phosphate isomerases/epimerases.
  
     0.584
Dfer_1379
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2468 hypothetical protein.
  
     0.527
Dfer_0322
PFAM: RagB/SusD domain protein; KEGG: gfo:GFO_1712 SusD/RagB family protein.
  
     0.515
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.