STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4879Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; SMART: regulatory protein LacI; KEGG: fjo:Fjoh_4188 regulatory protein, LacI. (354 aa)    
Predicted Functional Partners:
Dfer_5479
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: chu:CHU_3776 glutamate synthase (NADH) large subunit.
    
 
 0.861
Dfer_2601
KEGG: bfs:BF3147 LacI family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
  
     0.657
Dfer_5702
KEGG: dde:Dde_3654 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
  
     0.655
Dfer_4457
Transcriptional regulator, LuxR family; PFAM: Two component regulator three Y domain protein; regulatory protein LuxR; Two component regulator propeller; SMART: regulatory protein LuxR; KEGG: fjo:Fjoh_2430 putative periplasmic ligand- binding sensor protein.
  
     0.458
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.455
Dfer_0812
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Two component regulator three Y domain protein; Two component regulator propeller; histidine kinase A domain protein; helix-turn-helix- domain containing protein AraC type; SMART: response regulator receiver; helix-turn- helix- domain containing protein AraC type; histidine kinase A domain protein; ATP-binding region ATPase domain protein; KEGG: gfo:GFO_1697 two-component system sensor histidine kinase/response regulator hybrid.
  
   
 0.438
Dfer_1790
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2468 hypothetical protein.
  
     0.437
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
 
 0.434
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
    
   0.418
pheT
KEGG: chu:CHU_1130 phenylalanyl-tRNA synthetase subunit beta; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
    
   0.408
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.