STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_4997PFAM: inositol monophosphatase; KEGG: chu:CHU_3258 inositol-1-monophosphatase. (264 aa)    
Predicted Functional Partners:
Dfer_3127
PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: tye:THEYE_A1394 hypothetical protein.
 
 
 0.936
nadK
ATP-NAD/AcoX kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
 
    0.910
Dfer_4066
PFAM: oxidoreductase domain protein; KEGG: rba:RB3442 dehydrogenase.
    
 0.903
Dfer_5698
Inositol 2-dehydrogenase; PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ctc:CTC00511 myo-inositol 2-dehydrogenase.
    
 0.903
Dfer_0819
KEGG: ppf:Pput_2839 phosphatidylinositol-specific phospholipase C, X region.
    
  0.900
Dfer_1225
KEGG: sus:Acid_6235 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756.
     
  0.900
Dfer_5383
KEGG: sus:Acid_6235 phospholipase C; TIGRFAM: phospholipase C, phosphocholine-specific; PFAM: phosphoesterase; protein of unknown function DUF756.
     
  0.900
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
   
 
 0.880
Dfer_5213
KEGG: chu:CHU_3016 hypothetical protein.
   
   0.865
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.864
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.