STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5052KEGG: aas:Aasi_0660 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Dfer_0913
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: chu:CHU_2061 exodeoxyribonuclease III (exonuclease III).
  
 0.770
Dfer_2159
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: chu:CHU_2061 exodeoxyribonuclease III (exonuclease III).
  
 0.770
Dfer_2986
Exodeoxyribonuclease III Xth; KEGG: bth:BT_0630 exodeoxyribonuclease; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
  
 0.770
Dfer_0134
PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: psa:PST_0858 endonuclease.
   
  
 0.621
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.600
Dfer_4253
KEGG: chu:CHU_1553 hypothetical protein.
  
     0.548
Dfer_4076
PFAM: metallophosphoesterase; KEGG: aas:Aasi_0210 hypothetical protein.
 
     0.512
Dfer_5051
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: chu:CHU_2842 LysM repeat-containing protein.
       0.501
Dfer_3429
PFAM: outer membrane efflux protein; KEGG: chu:CHU_2515 outer membrane protein.
  
     0.498
Dfer_3019
PFAM: lipid A biosynthesis acyltransferase; KEGG: chu:CHU_1078 lauroyl/myristoyl acyltransferase.
 
     0.495
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.