STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5053KEGG: aba:Acid345_0352 hypothetical protein. (533 aa)    
Predicted Functional Partners:
Dfer_3344
Hypothetical protein; KEGG: bba:Bd1712 cell wall surface anchor family protein.
  
     0.744
Dfer_3346
KEGG: bba:Bd1130 putative YapH protein.
  
     0.722
Dfer_2529
Hypothetical protein; KEGG: bba:Bd0705 cell wall surface anchor family protein.
  
     0.720
Dfer_3029
KEGG: bba:Bd1130 putative YapH protein.
  
     0.678
Dfer_2259
PFAM: Carbohydrate binding family 6; KEGG: sde:Sde_2308 hypothetical protein.
  
     0.648
Dfer_3345
Hypothetical protein; KEGG: aba:Acid345_3469 Hep_Hag.
  
     0.635
Dfer_5661
KEGG: lsp:Bsph_0411 hypothetical protein.
  
     0.564
Dfer_5215
KEGG: pdi:BDI_3040 hypothetical protein.
  
     0.561
Dfer_2112
KEGG: fjo:Fjoh_4891 hypothetical protein.
  
     0.547
Dfer_2351
KEGG: fjo:Fjoh_3420 hypothetical protein.
 
     0.524
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.