STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5077KEGG: aba:Acid345_0818 hypothetical protein. (725 aa)    
Predicted Functional Partners:
Dfer_5078
KEGG: scl:sce8829 hypothetical protein.
       0.639
Dfer_3650
KEGG: gdj:Gdia_1187 hypothetical protein.
  
     0.622
Dfer_3966
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: chu:CHU_2469 [acyl-carrier-protein] S- malonyltransferase.
  
  
 0.589
Dfer_3348
KEGG: ote:Oter_0027 cytochrome c class I.
  
     0.511
Dfer_2442
PFAM: NHL repeat containing protein; cytochrome c class I; KEGG: ote:Oter_0027 cytochrome c class I.
  
     0.509
Dfer_5135
PFAM: outer membrane efflux protein; KEGG: fjo:Fjoh_2941 outer membrane efflux protein.
  
     0.453
Dfer_0665
KEGG: gbm:Gbem_2555 hypothetical protein.
  
     0.450
Dfer_5079
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: lbl:LBL_0249 amine oxidase (flavin- containing).
  
    0.415
Dfer_1973
KEGG: noc:Noc_2145 L-sorbosone dehydrogenase.
  
     0.408
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.