STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5118Ribonuclease H-related protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family. (209 aa)    
Predicted Functional Partners:
Dfer_5119
Methyltransferase small; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC).
       0.794
Dfer_5120
PFAM: glycosyl transferase family 2; KEGG: chu:CHU_1792 b-glycosyltransferase.
       0.631
Dfer_5117
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
       0.531
Dfer_3524
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sus:Acid_5733 redoxin domain-containing protein.
  
     0.526
Dfer_5116
KEGG: chu:CHU_2001 hypothetical protein.
       0.449
Dfer_2378
KEGG: pgi:PG1492 hypothetical protein.
  
     0.446
Dfer_3112
PFAM: Heavy metal transport/detoxification protein; KEGG: chu:CHU_1506 cation-transporting ATPase.
  
     0.437
Dfer_5115
PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: fjo:Fjoh_0524 multiple antibiotic resistance (MarC)-related protein.
       0.432
Dfer_3904
PFAM: peptidase M28; KEGG: bvu:BVU_1317 leucine aminopeptidase precursor.
 
     0.423
Dfer_2379
KEGG: pdi:BDI_2478 hypothetical protein.
  
     0.417
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.