STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5163PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: abu:Abu_2293 hypothetical protein. (279 aa)    
Predicted Functional Partners:
Dfer_3511
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; protein of unknown function DUF403; KEGG: abu:Abu_2294 hypothetical protein.
 
  
 0.877
Dfer_4414
PFAM: protein of unknown function DUF403; KEGG: cts:Ctha_2388 protein of unknown function DUF403.
 
  
 0.815
Dfer_4767
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: cts:Ctha_2389 protein of unknown function DUF404.
 
  
 0.805
Dfer_5162
KEGG: xca:xccb100_4414 hypothetical protein.
       0.773
Dfer_4518
KEGG: chu:CHU_1751 hypothetical protein.
  
     0.626
Dfer_5160
PFAM: glycosyl transferase group 1; KEGG: dps:DP2455 hypothetical protein.
       0.520
Dfer_5161
PFAM: glycosyl transferase group 1; KEGG: dps:DP2453 glycosyltransferase.
       0.520
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.