STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5170KEGG: pdi:BDI_3502 hypothetical protein. (401 aa)    
Predicted Functional Partners:
Dfer_5169
KEGG: bfr:BF1279 DNA primase.
   
 0.878
Dfer_5171
Excisionase; KEGG: chu:CHU_1463 excisionase.
       0.773
Dfer_0912
KEGG: pdi:BDI_2141 DNA primase.
   
 0.771
Dfer_5167
PFAM: Relaxase/mobilization nuclease family protein; KEGG: pgn:PGN_0925 putative mobilization protein.
 
     0.733
Dfer_5173
PFAM: integrase family protein; KEGG: chu:CHU_1462 Tn5520-like integrase (transfer factor); Belongs to the 'phage' integrase family.
 
     0.717
Dfer_0885
KEGG: fps:FP1572 hypothetical protein.
 
     0.621
Dfer_0947
KEGG: fps:FP1572 hypothetical protein.
 
     0.611
Dfer_2361
KEGG: fps:FP1539 hypothetical protein.
 
     0.593
Dfer_0971
KEGG: fps:FP1572 hypothetical protein.
 
     0.552
Dfer_5172
Hypothetical protein.
       0.541
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.