STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5187Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bfs:BF3939 GntR family transcriptional regulator. (126 aa)    
Predicted Functional Partners:
Dfer_5189
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bvu:BVU_1621 putative ABC transporter ATP- binding protein.
 
  
 0.913
Dfer_5188
KEGG: pdi:BDI_1102 hypothetical protein.
       0.782
Dfer_5186
Hypothetical protein.
       0.776
Dfer_4074
PFAM: protein of unknown function DUF179; KEGG: chu:CHU_1773 transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.528
Dfer_3787
KEGG: pdi:BDI_2051 hypothetical protein.
   
    0.470
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.