STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5260PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: pdi:BDI_1517 hypothetical protein. (1060 aa)    
Predicted Functional Partners:
Dfer_5259
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2333 hypothetical protein.
 
 
   0.932
Dfer_1459
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3678 hypothetical protein.
 
 
   0.784
Dfer_1564
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_0601 hypothetical protein.
  
 
   0.777
Dfer_4950
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3284 hypothetical protein.
 
 
   0.777
Dfer_5331
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_1908 hypothetical protein.
 
 
   0.773
Dfer_1724
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_2413 hypothetical protein.
 
 
   0.772
Dfer_4947
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3678 hypothetical protein.
 
 
   0.772
Dfer_3283
PFAM: RagB/SusD domain protein; KEGG: pdi:BDI_3583 hypothetical protein.
 
 
   0.766
Dfer_1583
PFAM: RagB/SusD domain protein; KEGG: bvu:BVU_1712 hypothetical protein.
 
 
   0.758
Dfer_1765
PFAM: RagB/SusD domain protein; KEGG: fjo:Fjoh_4646 RagB/SusD domain-containing protein.
  
 
   0.758
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.