STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5321TIGRFAM: cytochrome c oxidase accessory protein CcoG; KEGG: gfo:GFO_1436 FixG-like iron-sulfur-cluster- binding protein. (479 aa)    
Predicted Functional Partners:
Dfer_5323
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c oxidase subunit I; KEGG: chu:CHU_1138 cytochrome c oxidase, cbb3-type; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.984
Dfer_5322
PFAM: cytochrome c class I; KEGG: chu:CHU_1140 cytochrome c, mono- and diheme variant.
  
 0.980
Dfer_5319
KEGG: fjo:Fjoh_2541 hypothetical protein.
 
   
 0.942
Dfer_1787
PFAM: cytochrome C oxidase mono-heme subunit/FixO; cytochrome c class I; KEGG: ote:Oter_2870 cytochrome c oxidase mono-heme subunit/FixO.
 
  
 0.938
Dfer_5320
KEGG: chu:CHU_1142 hypothetical protein.
 
  
 0.931
Dfer_3476
KEGG: chu:CHU_2212 molybdopterin oxidoreductase, iron-sulfur binding subunit.
 
  
 0.896
Dfer_5318
KEGG: fps:FP1163 coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.896
Dfer_5324
TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3- type; KEGG: fps:FP1154 cytochrome cbb3 oxidase maturation protein CcoS.
 
  
 0.872
Dfer_5325
PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: fps:FP1153 cytochrome cbb3 oxidase maturation protein CcoI.
 
  
 0.865
Dfer_0441
Ferredoxin; KEGG: chu:CHU_2228 ferredoxin.
 
 
 0.669
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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