STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5456KEGG: fjo:Fjoh_4275 hypothetical protein. (453 aa)    
Predicted Functional Partners:
Dfer_5457
PFAM: Amidohydrolase 3; KEGG: bxe:Bxe_B2388 hypothetical protein.
 
     0.944
Dfer_5454
PFAM: isochorismatase hydrolase; KEGG: fjo:Fjoh_4273 isochorismatase hydrolase.
 
     0.855
Dfer_5455
PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: bch:Bcen2424_5911 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.503
Dfer_1518
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: fjo:Fjoh_1887 TonB-dependent receptor.
  
     0.467
Dfer_5540
KEGG: hypothetical protein.
  
     0.451
Dfer_5461
PFAM: histidine kinase dimerisation/phosphoacceptor; TPR repeat-containing protein; ATP-binding region ATPase domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide domain protein; KEGG: rci:RCIX420 signal transduction histidine kinase, fragment 2.
 
     0.436
Dfer_5459
PFAM: histidine kinase dimerisation/phosphoacceptor; TPR repeat-containing protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; Tetratricopeptide domain protein; KEGG: rci:LRC393 signal transduction histidine kinase.
 
     0.434
Dfer_5453
PFAM: DoxX family protein; KEGG: amu:Amuc_0456 DoxX family protein.
       0.416
Dfer_0087
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: chu:CHU_1713 outer membrane protein.
   
 
 0.408
Dfer_4338
PFAM: OmpA/MotB domain protein; WD40 domain protein beta Propeller; KEGG: chu:CHU_0125 outer membrane protein, peptidoglycan-associated lipoprotein.
   
 
 0.408
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.