STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5505PFAM: Terminase; KEGG: par:Psyc_0464 phage terminase, large subunit. (574 aa)    
Predicted Functional Partners:
Dfer_5504
TIGRFAM: phage terminase, small subunit, P27 family; PFAM: terminase small subunit putative P27; KEGG: mtc:MT3573.7 hypothetical protein.
 
    0.952
Dfer_5506
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: det:DET1087 HK97 family portal protein, putative.
 
   
 0.896
Dfer_5507
PFAM: peptidase U35 phage prohead HK97; KEGG: asu:Asuc_1239 HK97 family phage prohead protease.
 
     0.818
Dfer_5503
Hypothetical protein.
       0.773
Dfer_3479
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sru:SRU_1190 HNH endonuclease domain- containing protein.
  
  
 0.670
Dfer_5502
Hypothetical protein.
       0.506
Dfer_5496
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: pap:PSPA7_2376 DNA adenine methyltransferase.
 
     0.455
Dfer_5508
Hypothetical protein; KEGG: nmc:NMC0858 putative phage-related protein.
     
 0.421
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.