STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5693KEGG: mar:MAE_47160 hypothetical protein. (111 aa)    
Predicted Functional Partners:
Dfer_5692
PFAM: protein of unknown function DUF433; KEGG: rrs:RoseRS_0655 hypothetical protein.
 
   
 0.952
Dfer_2614
KEGG: afu:AF0598 hypothetical protein.
  
     0.559
Dfer_4621
PFAM: protein of unknown function DUF820; KEGG: cyb:CYB_1919 hypothetical protein.
  
     0.484
Dfer_5691
PFAM: PKD domain containing protein; KEGG: chu:CHU_2603 mannosidase-related.
       0.475
Dfer_0068
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: aas:Aasi_0982 hypothetical protein.
  
     0.462
Dfer_0115
KEGG: gvi:glr1771 hypothetical protein.
  
     0.459
Dfer_5088
PFAM: protein of unknown function DUF433; KEGG: cch:Cag_1312 hypothetical protein.
 
   
 0.450
Dfer_4619
PFAM: protein of unknown function DUF433; KEGG: npu:Npun_R2704 hypothetical protein.
 
   
 0.447
Dfer_4630
PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2760 protein of unknown function DUF433.
 
   
 0.439
Dfer_3676
PFAM: DNA polymerase beta domain protein region; KEGG: mja:MJ1379 hypothetical protein.
  
     0.406
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.