STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5724PFAM: glucose-methanol-choline oxidoreductase; KEGG: pat:Patl_2686 glucose-methanol-choline oxidoreductase. (573 aa)    
Predicted Functional Partners:
Dfer_5725
KEGG: pat:Patl_2685 twin-arginine translocation pathway signal.
 
 
 0.912
Dfer_2493
KEGG: smt:Smal_1043 twin-arginine translocation pathway signal.
 
 
 0.807
Dfer_4713
KEGG: cak:Caul_4605 hypothetical protein.
 
 
 0.806
Dfer_2891
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: chu:CHU_0759 WD-40 repeat-containing protein.
    
 0.795
Dfer_3234
PFAM: protein of unknown function DUF1080; KEGG: pdi:BDI_3914 hypothetical protein.
 
     0.713
Dfer_5055
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: mlo:mll3362 hypothetical protein.
 
     0.693
Dfer_2130
PFAM: protein of unknown function DUF1080; KEGG: smt:Smal_1044 protein of unknown function DUF1080.
 
     0.653
Dfer_4583
PFAM: protein of unknown function DUF1080; KEGG: gfo:GFO_1022 conserved hypothetical protein, secreted.
 
     0.639
Dfer_5058
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: chu:CHU_3128 oxidoreductase-dehydrogenase.
 
     0.497
Dfer_5723
PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE1399 hypothetical protein.
       0.493
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.