STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5787PFAM: LmbE family protein; KEGG: chu:CHU_2865 hypothetical protein. (826 aa)    
Predicted Functional Partners:
Dfer_0043
PFAM: Na+/solute symporter; KEGG: chu:CHU_2866 sodium-solute symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.790
Dfer_3622
KEGG: gfo:GFO_0519 hypothetical protein.
 
     0.750
Dfer_5004
KEGG: mxa:MXAN_6196 hypothetical protein.
  
     0.750
Dfer_2858
KEGG: fjo:Fjoh_4199 hypothetical protein.
  
     0.737
Dfer_4891
KEGG: fjo:Fjoh_4199 hypothetical protein.
 
     0.736
Dfer_5788
PFAM: 4'-phosphopantetheinyl transferase; KEGG: pdi:BDI_1990 siderophore biosynthesis regulatory protein.
 
     0.731
bshC
KEGG: fjo:Fjoh_4974 hypothetical protein; Belongs to the BshC family.
 
   
 0.600
Dfer_0389
KEGG: chu:CHU_3252 hypothetical protein.
  
     0.580
Dfer_5789
PFAM: peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase; KEGG: gfo:GFO_1653 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase.
       0.497
Dfer_3830
KEGG: gfo:GFO_2960 conserved hypothetical protein, membrane.
  
     0.469
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.