STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dfer_5801PFAM: ABC-2 type transporter; KEGG: chu:CHU_0386 ABC transporter, permease component. (425 aa)    
Predicted Functional Partners:
Dfer_5800
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fjo:Fjoh_1096 ABC transporter related.
 
  
 0.957
Dfer_5799
KEGG: chu:CHU_0388 hypothetical protein.
 
     0.953
Dfer_5798
KEGG: chu:CHU_0389 hypothetical protein.
 
     0.952
Dfer_5796
KEGG: chu:CHU_0391 hypothetical protein.
 
     0.915
Dfer_5797
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: chu:CHU_0390 3-oxoacyl-(acyl carrier protein) synthase III.
 
     0.915
Dfer_5802
KEGG: chu:CHU_0385 acyl carrier protein.
 
   
 0.889
Dfer_5795
KEGG: chu:CHU_0392 hypothetical protein.
 
     0.873
Dfer_5789
PFAM: peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase; KEGG: gfo:GFO_1653 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase.
 
     0.810
Dfer_2001
MCP methyltransferase, CheR-type; PFAM: phospholipid/glycerol acyltransferase; Methyltransferase type 11; MCP methyltransferase CheR- type; Methyltransferase type 12; SMART: phospholipid/glycerol acyltransferase; KEGG: bvu:BVU_1030 putative exporter.
 
     0.795
Dfer_5794
PFAM: Methyltransferase type 12; O- methyltransferase family 2; KEGG: vfm:VFMJ11_0880 SAM-dependent methyltransferase.
 
     0.790
Your Current Organism:
Dyadobacter fermentans
NCBI taxonomy Id: 471854
Other names: D. fermentans DSM 18053, Dyadobacter fermentans DSM 18053, Dyadobacter fermentans str. DSM 18053, Dyadobacter fermentans strain DSM 18053
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.