STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0273PFAM: Roadblock/LC7 family protein; KEGG: afr:AFE_2578 roadblock/LC7 domain protein. (149 aa)    
Predicted Functional Partners:
Jden_0275
PFAM: protein of unknown function ATP binding; KEGG: lch:Lcho_0656 small GTP-binding protein.
 
 
 0.998
Jden_0274
PFAM: protein of unknown function DUF742.
 
  
 0.975
Jden_0272
Putative sensor with HAMP domain; PFAM: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: ATPase, AAA family protein.
   
 0.954
Jden_0637
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: kpe:KPK_3793 transcriptional regulator MlrA.
  
     0.669
Jden_2527
PFAM: transcriptional regulator PadR family protein; KEGG: bcb:BCB4264_A2655 hypothetical protein.
  
     0.582
Jden_2505
PFAM: conserved hypothetical protein; KEGG: psa:PST_3725 Mg2+ transport ATPase.
  
     0.546
Jden_2386
KEGG: hypothetical protein LOC754593.
     
 0.538
Jden_1799
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: proteophosphoglycan 5.
  
     0.517
Jden_0443
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.504
Jden_1198
RecB family exonuclease-like protein; KEGG: hypothetical protein.
  
     0.476
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.