STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0277PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_5517 ABC transporter related. (511 aa)    
Predicted Functional Partners:
Jden_0278
KEGG: rpi:Rpic_4095 periplasmic binding protein/LacI transcriptional regulator.
 0.992
Jden_0280
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bmj:BMULJ_05565 simple sugar transport system permease protein.
 0.991
Jden_0281
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bvi:Bcep1808_6549 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 0.991
Jden_0279
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bph:Bphy_5517 ABC transporter related.
 
  
 
0.929
Jden_0268
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_2911 ABC alpha-glucoside transporter inner membrane binding protein.
     
  0.900
Jden_0276
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: scl:sce3317 HTH-type transcriptional repressor PurR.
  
    0.793
Jden_0504
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bha:BH3440 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
  
 0.788
Jden_0826
PFAM: inner-membrane translocator; KEGG: scl:sce7757 ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
     0.476
Jden_0827
PFAM: inner-membrane translocator; KEGG: scl:sce7756 uncharacterized ABC-type transport system,permease component.
     0.429
Jden_0274
PFAM: protein of unknown function DUF742.
       0.405
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.