STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0506H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: mno:Mnod_7572 cation transporter. (458 aa)    
Predicted Functional Partners:
Jden_0505
PFAM: TrkA-N domain protein; KEGG: mno:Mnod_7573 TrkA-N domain protein.
 
 0.992
Jden_1406
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: tcx:Tcr_0187 potassium transporter peripheral membrane component.
  
 
 0.797
Jden_1405
PFAM: TrkA-N domain protein; KEGG: rde:RD1_2464 trk potassium uptake system protein.
  
 
 0.774
Jden_0507
PFAM: histone deacetylase superfamily; KEGG: bha:BH3237 acetoin dehydrogenase.
   
   0.680
Jden_1312
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ank:AnaeK_4081 NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
  
 0.588
pheT
KEGG: afw:Anae109_1884 phenylalanyl-tRNA synthetase, beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit.
       0.402
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.402
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.