STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0645Conserved hypothetical protein; KEGG: reu:Reut_A0320 putative transmembrane cytochrome oxidase. (311 aa)    
Predicted Functional Partners:
Jden_1135
PFAM: cytochrome oxidase assembly; KEGG: sus:Acid_4821 cytochrome oxidase assembly.
 
 
 0.873
Jden_1097
Hypothetical protein.
  
 
   0.823
Jden_0644
Hypothetical protein.
       0.762
Jden_1679
Hypothetical protein.
  
     0.661
Jden_1571
PFAM: metallophosphoesterase.
  
     0.636
Jden_0643
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
       0.632
Jden_1448
PFAM: Rieske [2Fe-2S] domain protein; KEGG: bja:bll6221 Rieske iron-sulfur protein.
  
 
   0.619
Jden_1447
PFAM: cytochrome c class I; KEGG: pnu:Pnuc_0456 cytochrome c oxidase, cbb3- type, subunit III.
 
  
 0.611
Jden_0648
KEGG: mxa:MXAN_7409 hypothetical protein.
 
     0.593
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 
 0.585
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.