STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0679PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: reh:H16_B0802 pyridine nucleotide-disulphide oxidoreductase. (437 aa)    
Predicted Functional Partners:
Jden_1142
PFAM: Rieske [2Fe-2S] domain protein; KEGG: bpt:Bpet3740 phenylpropionate dioxygenase ferredoxin subunit.
  
 0.966
Jden_1587
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pca:Pcar_2193 NADH oxidase.
  
 0.943
Jden_1606
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SirA family protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: pca:Pcar_0429 uncharacterized NAD(FAD)- dependent dehydrogenase; Belongs to the sulfur carrier protein TusA family.
 
 
 0.864
Jden_2363
Sarcosine oxidase; PFAM: FAD dependent oxidoreductase; KEGG: met:M446_4751 sarcosine oxidase.
  
 
 0.798
Jden_2202
PFAM: Rieske [2Fe-2S] domain protein; KEGG: prw:PsycPRwf_1553 nitrite reductase (NAD(P)H), small subunit.
 
 
 0.768
Jden_0681
TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein; KEGG: acp:A2cp1_2925 riboflavin synthase, alpha subunit.
  
    0.743
Jden_2502
PFAM: copper resistance protein CopC; KEGG: bha:BH2291 hypothetical protein.
    
   0.703
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
    0.634
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
   
   0.566
Jden_0072
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: mxa:MXAN_0278 mercuric reductase, truncated.
 
 
 
 0.565
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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