STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0769PFAM: GCN5-related N-acetyltransferase; KEGG: rlt:Rleg2_3735 GCN5-related N- acetyltransferase. (171 aa)    
Predicted Functional Partners:
Jden_0767
PFAM: plasmid maintenance system killer; KEGG: pla:Plav_0020 plasmid maintenance system killer.
       0.773
Jden_0768
KEGG: hha:Hhal_1672 plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.773
Jden_0765
PFAM: Clp domain protein; KEGG: oan:Oant_4466 ATPase AAA-2 domain protein.
  
    0.501
Jden_0766
Hypothetical protein.
       0.494
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.