STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0789KEGG: predicted protein. (796 aa)    
Predicted Functional Partners:
Jden_0790
Hypothetical protein; KEGG: bxe:Bxe_B0776 putative membrane glycoprotein.
       0.773
Jden_0791
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mmr:Mmar10_2609 ABC transporter related.
       0.722
Jden_0792
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVUA0022 ABC transporter, ATP-binding protein.
       0.722
Jden_0787
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component.
       0.671
Jden_0788
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: rsq:Rsph17025_3273 acetamidase/formamidase; Belongs to the ABC transporter superfamily.
       0.671
Jden_0786
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_2317 peptide ABC transporter, permease protein.
       0.471
Jden_0793
TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: aba:Acid345_4404 GTP-binding protein TypA.
       0.460
Jden_0794
PFAM: LmbE family protein; KEGG: xcb:XC_2586 hypothetical protein.
       0.436
Jden_0795
Hypothetical protein.
       0.415
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.