STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0843PFAM: N-acetylneuraminic acid synthase domain; KEGG: aba:Acid345_2841 N-acetylneuraminate synthase. (296 aa)    
Predicted Functional Partners:
Jden_0844
PFAM: acylneuraminate cytidylyltransferase; KEGG: pca:Pcar_1278 CMP-N-acetylneuraminic acid synthetase.
 
 0.999
Jden_0839
KEGG: nme:NMB0065 hypothetical protein.
   
 0.963
Jden_0840
Hypothetical protein.
     
 0.875
Jden_0842
PFAM: glycosyl transferase family 2; KEGG: bcb:BCB4264_A5552 beta-1,3-N- acetylglucosaminyltransferase.
 
    0.868
Jden_0841
Hypothetical protein.
       0.819
Jden_0035
KEGG: afw:Anae109_1412 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.705
Jden_0845
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: atc:AGR_L_1864 biotin carboxylase protein A2.
   
   0.586
Jden_0038
Capsular exopolysaccharide family; KEGG: gur:Gura_1670 non-specific protein-tyrosine kinase; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.582
Jden_1863
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: rru:Rru_B0050 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.498
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ppd:Ppro_3455 flagellar hook-associated protein FlgK.
  
  
 0.473
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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