STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0961PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: acr:Acry_0683 extracellular solute-binding protein. (258 aa)    
Predicted Functional Partners:
Jden_0960
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_0684 polar amino acid ABC transporter, inner membrane subunit.
   0.997
Jden_0667
TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuC; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2161 putative inner membrane component of binding-protein-dependent transport system.
   0.985
Jden_1591
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3754 polar amino acid ABC transporter, inner membrane subunit.
   0.983
Jden_0668
TIGRFAM: ectoine/hydroxyectoine ABC transporter, permease protein EhuD; polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_5517 ectoine/hydroxyectoine ABC transporter, permease protein EhuD.
   0.974
Jden_0959
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_0685 ABC transporter related.
 
 
 0.968
Jden_1592
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcy:Bcer98_0542 polar amino acid ABC transporter, inner membrane subunit.
   0.962
Jden_1594
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_L_671 putative ATP-binding component of a transport system.
 
 
 0.862
Jden_0669
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_2156 ABC transporter related.
 
 
 0.857
Jden_1219
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: glo:Glov_3016 glutamate synthase (ferredoxin).
     
 0.552
Jden_0962
PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_0968 AMP-dependent synthetase and ligase.
       0.451
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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