STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_0994PFAM: magnesium chelatase ChlI subunit; KEGG: scl:sce2623 ATPase with chaperone activity, ComM-like protein. (340 aa)    
Predicted Functional Partners:
Jden_0993
PFAM: protein of unknown function UPF0102; KEGG: gur:Gura_3756 hypothetical protein; Belongs to the UPF0102 family.
 
  
 0.963
Jden_1000
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tgr:Tgr7_0193 smf protein.
 
 0.928
Jden_0991
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
       0.662
Jden_0992
Hypothetical protein.
       0.662
Jden_0990
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: gsu:GSU1267 signal peptidase I; Belongs to the peptidase S26 family.
       0.645
Jden_2418
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: glo:Glov_2100 putative phytochrome sensor protein.
   
    0.635
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
       0.629
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.611
Jden_1561
TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: afw:Anae109_2499 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.555
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
 
     0.517
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.