STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1003PFAM: Peptidase M23; KEGG: smt:Smal_2737 peptidase M23. (170 aa)    
Predicted Functional Partners:
Jden_1080
PFAM: protein of unknown function YGGT; KEGG: oan:Oant_0989 protein of unknown function YGGT.
  
     0.648
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: bha:BH2427 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.581
Jden_0808
Hypothetical protein.
  
     0.506
Jden_2423
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: hypothetical protein.
 
    0.450
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
       0.443
Jden_1121
KEGG: hypothetical protein.
  
   
 0.424
Jden_1040
Hypothetical protein.
  
     0.421
Jden_1921
PFAM: protein of unknown function DUF501; KEGG: csa:Csal_3040 hypothetical protein.
 
     0.415
disA
Protein of unknown function DUF147; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.
     
 0.402
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.402
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.