STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1284KEGG: hypothetical protein LOC690927. (162 aa)    
Predicted Functional Partners:
Jden_1282
PFAM: protein of unknown function DUF58; KEGG: dsh:Dshi_2905 hypothetical protein.
       0.808
Jden_1285
Hypothetical protein.
       0.808
Jden_1280
PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: bat:BAS5046 hypothetical protein.
       0.773
Jden_1281
Hypothetical protein.
       0.773
Jden_1283
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: bha:BH0604 methanol dehydrogenase regulatory protein.
       0.773
Jden_1286
KEGG: bha:BH1523 hypothetical protein.
       0.682
Jden_1287
KEGG: acp:A2cp1_0607 putative DeoR-family transcriptional regulator.
       0.498
Jden_1288
KEGG: mxa:MXAN_1360 hypothetical protein.
       0.498
Jden_1289
Hypothetical protein.
       0.474
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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