STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1405PFAM: TrkA-N domain protein; KEGG: rde:RD1_2464 trk potassium uptake system protein. (218 aa)    
Predicted Functional Partners:
Jden_1406
PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: tcx:Tcr_0187 potassium transporter peripheral membrane component.
 
  
 0.971
Jden_1404
KEGG: bcz:BCZK1697 amino acid permease.
 
   
 0.869
Jden_0506
H(+)-transporting two-sector ATPase; PFAM: cation transporter; KEGG: mno:Mnod_7572 cation transporter.
  
 
 0.774
Jden_1408
PFAM: nucleic acid binding OB-fold tRNA/helicase- type; KEGG: msu:MS1735 RecG protein.
  
     0.680
Jden_1312
PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ank:AnaeK_4081 NusB/RsmB/TIM44; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
   0.646
Jden_1241
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: bca:BCE_3580 molybdopterin converting factor, subunit 2.
   
    0.634
Jden_1403
PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: sus:Acid_5841 23S rRNA (uracil-5-)- methyltransferase RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.615
Jden_1402
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.556
Jden_2199
PFAM: Uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; KEGG: aeh:Mlg_1707 uroporphyrinogen III synthase HEM4.
  
    0.457
Jden_2493
Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.444
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.