STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1514Putative transcriptional regulator, PucR family; KEGG: reu:Reut_B5661 CdaR family transcriptional regulator. (419 aa)    
Predicted Functional Partners:
Jden_1515
(Acyl-carrier-protein) S-malonyltransferase; PFAM: Acyl transferase; KEGG: reu:Reut_A2264 [acyl-carrier-protein] S- malonyltransferase.
 
   
 0.820
acpP
Phosphopantetheine-binding; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
   
 0.735
Jden_0562
KEGG: swi:Swit_1609 hypothetical protein; Belongs to the UPF0336 family.
  
     0.626
Jden_1513
Hypothetical protein.
       0.593
fabH
3-oxoacyl-(acyl-carrier-protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
 
     0.584
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.561
Jden_1518
3-oxoacyl-(acyl-carrier-protein) synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.549
Jden_1720
Hypothetical protein.
  
     0.540
Jden_2048
KEGG: hypothetical protein.
  
     0.498
Jden_1314
KEGG: azo:azo3978 primosomal protein N' (replication factor Y).
  
     0.470
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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