STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1722PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rru:Rru_A1068 aminotransferase, class V. (412 aa)    
Predicted Functional Partners:
Jden_1145
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein.
  
 0.976
Jden_1246
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: hch:HCH_04098 molybdopterin/thiamine biosynthesis family protein.
   
 0.974
Jden_1455
PFAM: SirA family protein; KEGG: hha:Hhal_1218 SirA family protein; Belongs to the sulfur carrier protein TusA family.
   
 0.972
Jden_0094
PFAM: SirA family protein; KEGG: ilo:IL0009 redox protein, regulator of disulfide bond formation; Belongs to the sulfur carrier protein TusA family.
   
 0.968
Jden_1606
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SirA family protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: pca:Pcar_0429 uncharacterized NAD(FAD)- dependent dehydrogenase; Belongs to the sulfur carrier protein TusA family.
  
 
 0.933
Jden_1454
Cysteine desulfurase; PFAM: aminotransferase class V; KEGG: dds:Ddes_1075 cysteine desulfurase NifS.
  
  
 
0.928
Jden_0631
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: bpt:Bpet3067 thiosulfate sulfurtransferase.
   
 0.917
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
  
 0.864
Jden_1720
Hypothetical protein.
 
     0.783
Jden_1456
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: cja:CJA_0888 HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family.
 
  
 0.761
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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