STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1732Hypothetical protein; KEGG: proteophosphoglycan ppg4. (572 aa)    
Predicted Functional Partners:
Jden_1733
KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family.
 
     0.802
Jden_1974
Hypothetical protein; KEGG: mch:Mchl_4744 putative superfamily I DNA and RNA helicase protein.
  
     0.755
Jden_1571
PFAM: metallophosphoesterase.
  
     0.742
Jden_1579
KEGG: abo:ABO_0867 hypothetical protein.
  
     0.679
Jden_1224
PFAM: GCN5-related N-acetyltransferase; KEGG: mms:mma_0832 acetyltransferase.
  
     0.672
Jden_2505
PFAM: conserved hypothetical protein; KEGG: psa:PST_3725 Mg2+ transport ATPase.
  
     0.665
Jden_0637
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: kpe:KPK_3793 transcriptional regulator MlrA.
  
     0.649
Jden_1986
PFAM: UspA domain protein; KEGG: tgr:Tgr7_3238 universal stress protein.
  
     0.647
Jden_0452
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xca:xccb100_3038 cobalt-zinc-cadmium efflux permease.
   
    0.581
Jden_1429
Hypothetical protein.
  
     0.578
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.