STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1756KEGG: manB1; beta-mannosidase protein; K01192 beta-mannosidase. (880 aa)    
Predicted Functional Partners:
Jden_0064
KEGG: mpo:Mpop_1188 1-phosphofructokinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
   
    0.765
Jden_0734
PFAM: glycoside hydrolase family 5; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: azc:AZC_1301 endoglucanase.
 
  
 0.644
Jden_1755
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: scl:sce0662 LacI family transcription regulator.
 
     0.616
Jden_0232
Beta-N-acetylhexosaminidase; PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: sde:Sde_3037 glycosyl hydrolase.
 
 
 0.609
ispD
4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D- erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP).
  
  
 0.593
Jden_0248
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bvi:Bcep1808_5892 short-chain dehydrogenase/reductase SDR.
  
  
 0.566
Jden_1164
TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: aha:AHA_2251 3-oxoacyl-(acyl-carrier-protein) reductase.
  
  
 0.566
Jden_2379
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rpi:Rpic_0416 short-chain dehydrogenase/reductase SDR.
  
  
 0.566
Jden_0263
KEGG: bha:BH0549 hypothetical protein.
  
 
 0.541
Jden_1758
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1100 binding-protein-dependent transport systems inner membrane component.
  
    0.541
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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