STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1818TIGRFAM: DNA binding domain protein, excisionase family; KEGG: nwi:Nwi_0271 excisionase/Xis, DNA-binding. (71 aa)    
Predicted Functional Partners:
Jden_1817
PFAM: SAF domain protein.
 
   
 0.939
Jden_1816
Hypothetical protein; KEGG: sme:SMa1573 CpaE2 pilus assembly protein.
 
     0.912
Jden_0857
PFAM: type II secretion system protein; KEGG: bpt:Bpet2079 hypothetical protein.
  
     0.773
Jden_0861
PFAM: TadE family protein.
  
     0.771
Jden_0858
PFAM: type II secretion system protein; KEGG: type II secretion system protein.
  
     0.755
Jden_0859
Hypothetical protein.
  
     0.752
Jden_0874
Hypothetical protein.
  
     0.694
Jden_1819
Hypothetical protein.
  
   
 0.671
Jden_1638
Hypothetical protein.
  
     0.665
Jden_1815
Hypothetical protein.
       0.611
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.