STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_1892Hypothetical protein. (171 aa)    
Predicted Functional Partners:
mca
Mycothiol conjugate amidase Mca; A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl-inositol) S- conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics; Belongs to the MshB deacetylase family. Mca subfamily.
       0.712
Jden_1890
Hypothetical protein.
       0.707
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.632
Jden_2448
PFAM: copper resistance D domain protein; KEGG: bha:BH0892 hypothetical protein.
  
     0.577
Jden_0339
TIGRFAM: lycopene cyclase domain protein.
  
     0.567
Jden_1889
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: kpe:KPK_3915 hydrolase, carbon-nitrogen family.
       0.552
Jden_1855
PFAM: protein of unknown function DUF343; KEGG: pau:PA14_25520 hypothetical protein.
  
     0.544
Jden_0337
PFAM: UbiA prenyltransferase; KEGG: gbm:Gbem_0232 4-hydroxybenzoate polyprenyltransferase.
  
     0.528
Jden_1483
PFAM: RDD domain containing protein.
  
     0.522
Jden_0338
TIGRFAM: lycopene cyclase domain protein.
  
     0.517
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.