STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2072PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc02471 putative periplasmic binding ABC transporter protein. (431 aa)    
Predicted Functional Partners:
Jden_2071
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02025 multiple sugar transport system permease protein.
 
 0.995
Jden_2070
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02026 multiple sugar transport system permease protein.
 
 0.993
Jden_2065
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bsu:BSU38810 multiple sugar-binding transport ATP-binding protein.
  
 0.927
Jden_1757
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_1731 putative sugar ABC transporter, permease protein.
  
 0.895
Jden_1758
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1100 binding-protein-dependent transport systems inner membrane component.
  
  0.889
Jden_2073
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: smd:Smed_4315 periplasmic binding protein/LacI transcriptional regulator.
 
     0.752
Jden_2069
PFAM: glycoside hydrolase family 3 domain protein; KEGG: esa:ESA_02100 hypothetical protein.
 
     0.738
Jden_0012
PFAM: glycoside hydrolase family 10; SMART: glycoside hydrolase family 10; KEGG: sus:Acid_2816 glycoside hydrolase family protein.
 
     0.701
Jden_1880
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1926 sugar transport system (permease).
 
 
 0.632
Jden_1881
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1925 sugar transport system (permease).
 
   0.630
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.