STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2110PFAM: NLP/P60 protein; KEGG: bte:BTH_II0129 rhs element Vgr protein. (491 aa)    
Predicted Functional Partners:
Jden_0330
PFAM: Peptidase M23; protein of unknown function DUF1058; SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pla:Plav_1754 peptidase M23B.
  
  
 0.625
Jden_0865
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.611
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.590
Jden_0866
PFAM: Peptidase M23; KEGG: bha:BH3600 cell wall-binding protein.
  
  
 0.528
Jden_2328
KEGG: nwi:Nwi_1540 hypothetical protein.
  
  
 0.477
Jden_0043
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0281 ABC transporter ATP-binding protein.
  
  
 0.464
Jden_1219
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: glo:Glov_3016 glutamate synthase (ferredoxin).
       0.402
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.