STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2125PFAM: glycosyl hydrolase 53 domain protein; KEGG: sde:Sde_3710 arabinogalactan endo-1,4-beta- galactosidase. (364 aa)    
Predicted Functional Partners:
Jden_2383
Endo-1,4-beta-xylanase; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; PFAM: glycoside hydrolase family 11; cellulose- binding family II; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.708
Jden_0510
PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.692
Jden_0731
PFAM: cellulose-binding family II; glycosyl hydrolase BNR repeat-containing protein; SMART: cellulose-binding family II; KEGG: cja:CJA_2477 endo-1,4-beta- glucanase/xyloglucanase, putative, gly74A.
  
     0.651
Jden_0732
PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase.
 
     0.638
Jden_0733
PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II; KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase.
 
     0.635
Jden_1765
KEGG: bha:BH0842 hypothetical protein.
  
     0.617
Jden_1928
PFAM: Carbohydrate-binding CenC domain protein; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: bsu:BSU18160 endo-1,4-beta-xylanase (xylanase D).
  
     0.608
Jden_0516
PFAM: glycoside hydrolase family 43; KEGG: shw:Sputw3181_1961 arabinan endo-1,5-alpha-L- arabinosidase.
  
     0.596
Jden_0215
Hypothetical protein; KEGG: cja:CJA_3559 rhamnogalacturonan lyase, rgl11A.
  
     0.579
Jden_1622
PFAM: glycoside hydrolase family 43; SMART: LamG domain protein jellyroll fold domain protein; KEGG: bha:BH1878 hypothetical protein.
  
     0.573
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.