STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Jden_2127Hypothetical protein. (163 aa)    
Predicted Functional Partners:
Jden_2129
Hypothetical protein.
     
 0.781
Jden_2128
PFAM: protein of unknown function DUF955.
       0.773
Jden_2490
PFAM: protein of unknown function DUF571; KEGG: hypothetical protein.
  
 
 0.682
Jden_0138
KEGG: hypothetical protein.
   
 
 0.594
Jden_2054
PFAM: protein of unknown function DUF909; Belongs to the WXG100 family.
   
 
 0.594
Jden_2488
Hypothetical protein; Belongs to the WXG100 family.
   
 
 0.594
Jden_1076
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
   
 
 0.583
Jden_2130
Hypothetical protein.
       0.531
Jden_0282
Hypothetical protein; KEGG: sus:Acid_6846 NHL repeat-containing protein.
    
   0.465
Jden_0459
PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein; KEGG: sde:Sde_1294 polyhydroxyalkanoate synthesis repressor PhaR.
    
   0.465
Your Current Organism:
Jonesia denitrificans
NCBI taxonomy Id: 471856
Other names: J. denitrificans DSM 20603, Jonesia denitrificans DSM 20603, Jonesia denitrificans str. DSM 20603, Jonesia denitrificans strain DSM 20603
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.